You can also find a list of Bernot Lab publications on Google Scholar
Email if interested in reprints not available at the DOIs.


Bernot JP, Boxshall GA, Goetz FE, Phillips AJ. (2024). MicroCT illuminates the unique morphology of Shiinoidae (Copepoda: Cyclopoida), an unusual group of fish parasites. PeerJ.

Ismail N, Nishida Y, Ohtsuka S, Boxshall G, Bernot JP. (2024). First record of Caligus dussumieri Rangnekar, 1957 (Copepoda, Siphonostomatoida, Caligidae) from Malaysia, with notes on caligids found from Malaysia and on host-specificity of caligids on lutjanid fishes. Biodiversity Data Journal.


Boxshall GA, Bernot JP. (2023). Resolving taxonomic and nomenclatural problems in the genus Caligus O.F. Müller, 1785 (Copepoda: Caligidae). Zootaxa.

Bernot JP, Owen CL, Wolfe JM, Meland K, Olesen J, Crandall KA. (2023) Major Revisions in Pancrustacean Phylogeny and Evidence of Sensitivity to Taxon Sampling. Molecular Biology and Evolution.


Hawdon JM, Bernot JP. (2022). Teaching Parasitology Lab Remotely Using Livestreaming. The American Biology Teacher.

Bernot JP, Avdeyev P, Zamyatin A, Alexeev N, Dreyer N, Pérez-Losada M, Crandall KA. (2022). Chromosome-level genome assembly, annotation, and phylogenomics of the gooseneck barnacle Pollicipes pollicipes. GigaScience.


Bernot JP, Boxshall GA, Crandall KA. (2021). A synthesis tree of the Copepoda: integrating phylogenetic and taxonomic data reveals multiple origins of parasitism. PeerJ.

Haskins IN, Wang B-D, Bernot JP, Cauley EC, Horvath A, Marks JH, Lee NH, Agarwal S. (2021). Genomics of Black American Colon Cancer Disparities: An RNA-Seq Study from an Academic, Tertiary Referral Center. Surgery.


Bernot JP, Rudy G, Erickson PT, Ratnappan R, Haile M, Rosa BA, Mitreva M, O’Halloran DM, Hawdon JM. (2020). Transcriptomic analysis of hookworm Ancylostoma ceylanicum life cycle stages reveals changes in GPCR diversity associated with the onset of parasitism. International Journal for Parasitology.

Boxshall GA, Bernot JP, Barton DP, Diggles BK, Yong RQ-Y, Atkinson-Coyle T, Hutson KS. (2020). Parasitic copepods of the family Lernanthropidae Kabata, 1979 (Copepoda: Siphonostomatoida). from Australian fishes with descriptions of seven new species. Zootaxa.

Maynard T, Horvath A, Bernot JP, Karpinksi B, Tavares ALP, Zeng ASQ, Spurr L, Olender J, Moody SA, Fraser CM, LaMantia AS, Lee NH. (2020). Transcriptional dysregulation in developing trigeminal sensory neurons in the LgDel mouse model of DiGeorge 22q11.2 Deletion Syndrome. Human Molecular Genetics.

Fujiogi M, Camargo CA Jr, Bernot JP, Freishtat RJ, Harmom B, Mansbach J, Castro-Nallar E, Perez-Losada M, Hasegawa K. (2020). In infants with severe bronchiolitis: dual-transcriptomic profiling of nasopharyngeal microbiome and host response. Pediatric Research.


Bernot JP, Caira JN. (2019). Site specificity and attachment mode of Symcallio and Calliobothrium species (Cestoda: “Tetraphyllidea”). in smoothhound sharks of the genus Mustelus (Carcharhiniformes: Triakidae). PeerJ

Bernot JP, Boxshall GA. (2019). Two new species of parasitic copepods from the genera Nothobomolochus and Unicolax (Cyclopoida: Bomolochidae). from Australian waters. PeerJ


Hughes LC, Somoza GM, Nguyen BM, Bernot JP, González-Castro M, Díaz de Astarloa JM, Ortí G. (2017). Transcriptomic differentiation underlying marine-to-freshwater transitions in the South American silversides Odontesthes argentinensis and O. bonariensis (Atheriniformes). Ecology and Evolution

Bernot JP, Boxshall GA. (2017). A new species of Pseudopandarus Kirtisinghe, 1950 (Copepoda: Siphonostomatoida: Pandaridae). from sharks of the genus Squalus L. in New Caledonian waters. Systematic Parasitology 94: 275–291.


Bernot JP, Caira JN, Pickering M. (2016). Diversity, phylogenetic relationships, and host associations of Calliobothrium and Symcallio (Cestoda: “Tetraphyllidea”). parasitizing triakid sharks. Invertebrate Systematics 30: 616–634.


Bernot JP, Caira JN, Pickering M. (2015). The dismantling of Calliobothrium (Cestoda: Tetraphyllidea). with erection of Symcallio n. gen. and description of two new species. The Journal of Parasitology 101: 167–181.